Publications

PLoS biology. 2023-06-30; 21.6: e3002133.
A guide to the BRAIN Initiative Cell Census Network data ecosystem
Hawrylycz M, Martone ME, Ascoli GA, Bjaalie JG, Dong HW, Ghosh SS, Gillis J, Hertzano R, Haynor DR, Hof PR, Kim Y, Lein E, Liu Y, Miller JA, Mitra PP, Mukamel E, Ng L, Osumi-Sutherland D, Peng H, Ray PL, Sanchez R, Regev A, Ropelewski A, Scheuermann RH, Tan SZK, Thompson CL, Tickle T, Tilgner H, Varghese M, Wester B, White O, Zeng H, Aevermann B, Allemang D, Ament S, Athey TL, Baker C, Baker KS, Baker PM, Bandrowski A, Banerjee S, Bishwakarma P, Carr A, Chen M, Choudhury R, Cool J, Creasy H, D'Orazi F, Degatano K, Dichter B, Ding SL, Dolbeare T, Ecker JR, Fang R, Fillion-Robin JC, Fliss TP, Gee J, Gillespie T, Gouwens N, Zhang GQ, Halchenko YO, Harris NL, Herb BR, Hintiryan H, Hood G, Horvath S, Huo B, Jarecka D, Jiang S, Khajouei F, Kiernan EA, Kir H, Kruse L, Lee C, Lelieveldt B, Li Y, Liu H, Liu L, Markuhar A, Mathews J, Mathews KL, Mezias C, Miller MI, Mollenkopf T, Mufti S, Mungall CJ, Orvis J, Puchades MA, Qu L, Receveur JP, Ren B, Sjoquist N, Staats B, Tward D, van Velthoven CTJ, Wang Q, Xie F, Xu H, Yao Z, Yun Z, Zhang YR, Zheng WJ, Zingg B
PMID: 37390046
Cell reports. Medicine. 2023-06-20; 4.6: 101088.
Targets and cross-reactivity of human T cell recognition of common cold coronaviruses
Tarke A, Zhang Y, Methot N, Narowski TM, Phillips E, Mallal S, Frazier A, Filaci G, Weiskopf D, Dan JM, Premkumar L, Scheuermann RH, Sette A, Grifoni A
PMID: 37295422
ACS synthetic biology. 2023-06-16; 12.6: 1616-1623.
Cell-Free Expression System Derived from a Near-Minimal Synthetic Bacterium
Sakai A, Jonker AJ, Nelissen FHT, Kalb EM, van Sluijs B, Heus HA, Adamala KP, Glass JI, Huck WTS
PMID: 37278603
Scientific reports. 2023-06-13; 13.1: 9567.
Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain
Zhang Y, Miller JA, Park J, Lelieveldt BP, Long B, Abdelaal T, Aevermann BD, Biancalani T, Comiter C, Dzyubachyk O, Eggermont J, Langseth CM, Petukhov V, Scalia G, Vaishnav ED, Zhao Y, Lein ES, Scheuermann RH
PMID: 37311768
Microbiome. 2023-06-05; 11.1: 127.
Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort
Claassen-Weitz S, Gardner-Lubbe S, Xia Y, Mwaikono KS, Mounaud SH, Nierman WC, Workman L, Zar HJ, Nicol MP
PMID: 37271810
Open forum infectious diseases. 2023-06-05; 10.6: ofad302.
Inundative, Dry-Powder, Inhaled Measles Vaccination to Prevent Deaths of Young Children in War-torn Regions
Sievers BL, Sievers RE, Sievers EL
PMID: 37383252
Current clinical microbiology reports. 2023-06-01; 10.2: 17-28.
Genetic Diversity of Human Fungal Pathogens
Freese J, Beyhan S
PMID: 37388463
Hepatology (Baltimore, Md.). 2023-06-01; 77.6: 2073-2083.
Any alcohol use in NAFLD patients is associated with significant changes to the intestinal virome
Hsu CL, Lang S, Demir M, Fouts DE, Stärkel P, Schnabl B
PMID: 36631002
Cell reports. 2023-05-30; 42.5: 112494.
Competition between skin antimicrobial peptides and commensal bacteria in type 2 inflammation enables survival of S. aureus
Nakatsuji T, Brinton SL, Cavagnero KJ, O'Neill AM, Chen Y, Dokoshi T, Butcher AM, Osuoji OC, Shafiq F, Espinoza JL, Dupont CL, Hata TR, Gallo RL
PMID: 37167061
Nature communications. 2023-05-25; 14.1: 3026.
A neonatal mouse model characterizes transmissibility of SARS-CoV-2 variants and reveals a role for ORF8
Rodriguez-Rodriguez BA, Ciabattoni GO, Duerr R, Valero-Jimenez AM, Yeung ST, Crosse KM, Schinlever AR, Bernard-Raichon L, Rodriguez Galvan J, McGrath ME, Vashee S, Xue Y, Loomis CA, Khanna KM, Cadwell K, Desvignes L, Frieman MB, Ortigoza MB, Dittmann M
PMID: 37230979

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