Publications

Nature. 2005-02-24; 433.7028: 865-8.
The genome of the protist parasite Entamoeba histolytica
Loftus B, Anderson I, Davies R, Alsmark UC, Samuelson J, Amedeo P, Roncaglia P, Berriman M, Hirt RP, Mann BJ, Nozaki T, Suh B, Pop M, Duchene M, Ackers J, Tannich E, Leippe M, Hofer M, Bruchhaus I, Willhoeft U, Bhattacharya A, Chillingworth T, Churcher C, Hance Z, Harris B, Harris D, Jagels K, Moule S, Mungall K, Ormond D, Squares R, Whitehead S, Quail MA, Rabbinowitsch E, Norbertczak H, Price C, Wang Z, Guillén N, Gilchrist C, Stroup SE, Bhattacharya S, Lohia A, Foster PG, Sicheritz-Ponten T, Weber C, Singh U, Mukherjee C, El-Sayed NM, Petri WA, Clark CG, Embley TM, Barrell B, Fraser CM, Hall N
PMID: 15729342
Infection and immunity. 2005-02-01; 73.2: 1069-80.
Murine macrophage transcriptional responses to Bacillus anthracis infection and intoxication
Bergman NH, Passalacqua KD, Gaspard R, Shetron-Rama LM, Quackenbush J, Hanna PC
PMID: 15664951
Trends in microbiology. 2005-02-01; 13.2: 56-7.
A virus with big ambitions
Ghedin E, Fraser CM
PMID: 15680763
Bioinformatics (Oxford, England). 2005-02-01; 21.3: 293-306.
Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics
Haft DH, Selengut JD, Brinkac LM, Zafar N, White O
PMID: 15347579
Genome. 2005-02-01; 48.1: 125-38.
Genomic analysis of a region encompassing QRfs1 and QRfs2: genes that underlie soybean resistance to sudden death syndrome
Triwitayakorn K, Njiti VN, Iqbal MJ, Yaegashi S, Town C, Lightfoot DA
PMID: 15729404
BMC bioinformatics. 2005-01-24; 6.16.
Efficient decoding algorithms for generalized hidden Markov model gene finders
Majoros WH, Pertea M, Delcher AL, Salzberg SL
PMID: 15667658
Oncogene. 2005-01-13; 24.3: 489-501.
Autocrine activation of an osteopontin-CD44-Rac pathway enhances invasion and transformation by H-RasV12
Teramoto H, Castellone MD, Malek RL, Letwin N, Frank B, Gutkind JS, Lee NH
PMID: 15516973
Science (New York, N.Y.). 2005-01-07; 307.5706: 105-8.
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
Seshadri R, Adrian L, Fouts DE, Eisen JA, Phillippy AM, Methe BA, Ward NL, Nelson WC, Deboy RT, Khouri HM, Kolonay JF, Dodson RJ, Daugherty SC, Brinkac LM, Sullivan SA, Madupu R, Nelson KE, Kang KH, Impraim M, Tran K, Robinson JM, Forberger HA, Fraser CM, Zinder SH, Heidelberg JF
PMID: 15637277
Science (New York, N.Y.). 2005-01-07; 307.5706: 82-6.
A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses
Hall N, Karras M, Raine JD, Carlton JM, Kooij TW, Berriman M, Florens L, Janssen CS, Pain A, Christophides GK, James K, Rutherford K, Harris B, Harris D, Churcher C, Quail MA, Ormond D, Doggett J, Trueman HE, Mendoza J, Bidwell SL, Rajandream MA, Carucci DJ, Yates JR, Kafatos FC, Janse CJ, Barrell B, Turner CM, Waters AP, Sinden RE
PMID: 15637271
BMC bioinformatics. 2005-01-05; 6.2.
Visualization of comparative genomic analyses by BLAST score ratio
Rasko DA, Myers GS, Ravel J
PMID: 15634352

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